A Patient–Provider Playbook to Improve Diagnosis of Autoimmune Diseases

By Tara Bruner

Millions of people across the United States experience joint pain, fatigue, or stiffness. These symptoms are commonly associated with autoimmune diseases such as rheumatoid arthritis (RA), which affect about 4.6% of the U.S. population. Diagnosing autoimmune conditions remains difficult, with studies indicating that up to 76% of patients receive at least one incorrect diagnosis before the underlying cause is identified.

Such delays in diagnosis can be frustrating and take a toll on both physical and mental health. Delays can also result in significant harm, as conditions like RA may cause irreversible joint damage if not treated promptly. However, advances in diagnostic technology and increased patient engagement are beginning to improve outcomes.

Why Rheumatic Diseases Are Hard to Diagnose

Rheumatic diseases include autoimmune and inflammatory disorders affecting the joints, muscles, tendons, and ligaments. Their early signs frequently resemble common health issues, such as the natural effects of aging, everyday stress, or minor aches and pains. This overlap often leads to the misdiagnosis of symptoms, complicating early detection. Autoimmune diseases don’t follow a script – and vague, shifting symptoms often defy simple explanations.

RA is also frequently confused with other conditions, including osteoarthritis, fibromyalgia, and depression. Research shows that about 20% of patients diagnosed with RA initially receive an incorrect diagnosis. On average, the interval between symptom onset and accurate diagnosis spans about 12 months or longer.

Limited access to rheumatology specialists, particularly in rural or underserved areas, can further delay evaluation. Primary care providers may initially adopt a conservative approach to treatment, recommending rest or symptomatic treatment before pursuing advanced diagnostics. This inadvertently extends the diagnostic timeline.

Collectively, these factors result in many patients being undiagnosed or misdiagnosed for extended periods, during which ongoing inflammation may cause progressive and potentially irreversible joint damage.

The Role of Early Testing

Selecting the right diagnostic test at the right time is crucial to shortening the often lengthy and frustrating journey toward an accurate diagnosis. Fortunately, recent advances in testing have expanded the tools available to healthcare provider, but a timely diagnosis still hinges on informed, collaborative discussions between patients and providers.

A productive clinical visit begins with patients clearly sharing their symptom history. This includes when symptoms began, their frequency, severity, morning stiffness, flare-up patterns, and any noticeable changes over time.

This firsthand context from patients helps providers determine which tests are most appropriate, such as those for rheumatoid factor (RF); anti-cyclic citrullinated peptide (anti-CCP) antibodies; and Inflammatory markers like C-reactive protein (CRP) and erythrocyte sedimentation rate (ESR).

Tests such as Thermo Fisher’s EliA™ autoimmunity assays provide clinicians with extra insight to support more precise diagnoses and can help tailor treatment recommendations. The assays monitor a wide range of autoimmune diseases by detecting and measuring antibodies in a patient's blood. These tests can aid in the diagnosis of conditions like RA, celiac disease, and thyroid disorders.

Providers should explain to patients what each test measures, what the results might indicate, and how those results will shape the treatment plan. Patients should be encouraged to ask questions about the purpose and limitations of testing, as well as next steps – whether that’s additional tests, follow-up appointments, or referrals to specialists like rheumatologists.

Because autoimmune diseases often present with vague or overlapping symptoms, test results alone may not be definitive. That’s why providers rely heavily on patient-reported symptom changes, triggers, and how those symptoms affect everyday life --- general insights that can help uncover patterns lab results might miss.

It’s important to note that even when test results rule out certain conditions, that information is still considered valuable. It narrows the diagnostic focus and helps maintain momentum toward finding answers. When there are cases of uncertainty or slow progress, seeking a second opinion is reasonable and sometimes essential.

Ultimately, effective diagnosis is a joint effort: patients contribute lived experience, while providers bring clinical expertise. This shared decision-making builds trust, accelerates diagnosis, and leads to earlier, more targeted treatment, which improves both short- and long-term outcomes.

Women Face Greater Diagnostic Delays

RA disproportionately affects women, who constitute nearly 80% of all cases. Despite this high prevalence, women are significantly more likely to be misdiagnosed or experience delays in receiving appropriate care. In fact, a study examining healthcare misdiagnoses  found that approximately two-thirds of those who reported being misdiagnosed were women, highlighting a systemic issue of diagnostic disparities.

The typical symptoms of fatigue, joint pain, and general discomfort are frequently dismissed in women or attributed to stress or hormonal changes, rather than recognized as signs of an underlying autoimmune condition. Hormonal fluctuations, particularly during childbearing years, can mask or mimic autoimmune symptoms, making timely diagnosis even more challenging.

These diagnostic delays can lead to serious consequences for women, including permanent joint damage, decreased mobility, and long-term physical impairment. Emotional distress caused by being dismissed or misunderstood exacerbates the overall disease burden and negatively impacts quality of life. Delays often result in the need for more intensive and costly treatments.

Recognizing and validating unexplained symptoms in women is crucial for a timely diagnosis and appropriate intervention, ultimately improving outcomes.

Advocating for Patients as Partners in Diagnosis

An accurate diagnosis doesn’t happen through testing alone. It requires patients to speak up, track patterns, push for clarity, and challenge delays.

Patients are not passive participants in their care. They are the key to faster, more accurate diagnoses. By documenting symptoms, asking hard questions, and refusing to accept vague answers, patients can help uncover critical insights that standard labs don’t reveal.

What changes outcomes is a patient who actively engages, and a provider who listens to them without bias or assumptions. Together, they form a partnership that prioritizes answers over assumptions and action over wait-and-see.

Clear communication, persistent advocacy, and a refusal to be dismissed – these are not optional. They are the foundation of faster diagnoses and better care.

The process to achieve faster autoimmune diagnosis requires patients to receive proactive primary care tests and to maintain open dialogue with their doctors.

The patient's personal understanding of their medical experience should receive equal recognition as well. The active involvement of patients, combined with advanced diagnostics, will enhances rheumatic disease treatment and produce superior long-term results.

Tara Bruner is a Physician Associate and Manager of Clinical Education for Thermo Fisher Scientific.